library(tidymass)
#> Warning in fun(libname, pkgname): mzR has been built against a different Rcpp version (1.0.7)
#> than is installed on your system (1.0.8). This might lead to errors
#> when loading mzR. If you encounter such issues, please send a report,
#> including the output of sessionInfo() to the Bioc support forum at
#> https://support.bioconductor.org/. For details see also
#> https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
#> Registered S3 method overwritten by 'Hmisc':
#> method from
#> vcov.default fit.models
#> Warning: replacing previous import 'massdataset::mz_rt_match' by
#> 'masstools::mz_rt_match' when loading 'tidymass'
#> ── Attaching packages ─────────────────────────────────────── tidymass 0.99.6 ──
#> ✓ massdataset 0.99.20 ✓ metpath 0.99.4
#> ✓ massprocesser 0.99.3 ✓ metid 1.2.4
#> ✓ masscleaner 0.99.7 ✓ masstools 0.99.5
#> ✓ massqc 0.99.7 ✓ dplyr 1.0.8
#> ✓ massstat 0.99.13 ✓ ggplot2 3.3.5
#> ── Conflicts ─────────────────────────────────────────── tidymass_conflicts() ──
#> x massdataset::apply() masks base::apply()
#> x dplyr::collect() masks xcms::collect()
#> x BiocGenerics::colMeans() masks massdataset::colMeans(), base::colMeans()
#> x BiocGenerics::colSums() masks massdataset::colSums(), base::colSums()
#> x dplyr::combine() masks MSnbase::combine(), Biobase::combine(), BiocGenerics::combine()
#> x dplyr::filter() masks metpath::filter(), massdataset::filter(), stats::filter()
#> x dplyr::first() masks S4Vectors::first()
#> x dplyr::groups() masks xcms::groups()
#> x S4Vectors::intersect() masks BiocGenerics::intersect(), massdataset::intersect(), base::intersect()
#> x dplyr::lag() masks stats::lag()
#> x masstools::mz_rt_match() masks massdataset::mz_rt_match()
#> x dplyr::rename() masks S4Vectors::rename(), massdataset::rename()
#> x BiocGenerics::rowMeans() masks massdataset::rowMeans(), base::rowMeans()
#> x BiocGenerics::rowSums() masks massdataset::rowSums(), base::rowSums()
sessionInfo()
#> R Under development (unstable) (2022-01-11 r81473)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur/Monterey 10.16
#>
#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
#>
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#>
#> attached base packages:
#> [1] stats4 stats graphics grDevices utils datasets methods
#> [8] base
#>
#> other attached packages:
#> [1] dplyr_1.0.7 masstools_0.99.1 metid_1.1.0
#> [4] metpath_0.0.1 massstat_0.0.1 ggfortify_0.4.14
#> [7] ggplot2_3.3.5 massqc_0.0.1 masscleaner_0.9.2
#> [10] xcms_3.17.1 MSnbase_2.21.3 ProtGenerics_1.27.2
#> [13] S4Vectors_0.33.10 mzR_2.29.1 Rcpp_1.0.7
#> [16] Biobase_2.55.0 BiocGenerics_0.41.2 BiocParallel_1.29.10
#> [19] massprocesser_0.9.2 magrittr_2.0.1 tinytools_0.9.1
#> [22] massdataset_0.99.1 tidymass_0.0.1
#>
#> loaded via a namespace (and not attached):
#> [1] utf8_1.2.2 tidyselect_1.1.1
#> [3] robust_0.6-1 htmlwidgets_1.5.4
#> [5] grid_4.2.0 devtools_2.4.3
#> [7] munsell_0.5.0 codetools_0.2-18
#> [9] ragg_1.2.1 preprocessCore_1.57.0
#> [11] future_1.23.0 withr_2.4.3
#> [13] colorspace_2.0-2 knitr_1.37
#> [15] rstudioapi_0.13 robustbase_0.93-8
#> [17] listenv_0.8.0 mzID_1.33.0
#> [19] MatrixGenerics_1.7.0 GenomeInfoDbData_1.2.7
#> [21] polyclip_1.10-0 farver_2.1.0
#> [23] rprojroot_2.0.2 parallelly_1.30.0
#> [25] vctrs_0.3.8 generics_0.1.1
#> [27] xfun_0.29 itertools_0.1-3
#> [29] randomForest_4.6-14 R6_2.5.1
#> [31] doParallel_1.0.16 GenomeInfoDb_1.31.1
#> [33] graphlayouts_0.8.0 clue_0.3-60
#> [35] MsCoreUtils_1.7.1 bitops_1.0-7
#> [37] cachem_1.0.6 gridGraphics_0.5-1
#> [39] DelayedArray_0.21.2 assertthat_0.2.1
#> [41] scales_1.1.1 ggraph_2.0.5
#> [43] gtable_0.3.0 globals_0.14.0
#> [45] affy_1.73.0 processx_3.5.2
#> [47] tidygraph_1.2.0 rlang_0.4.12
#> [49] clisymbols_1.2.0 systemfonts_1.0.3
#> [51] GlobalOptions_0.1.2 lazyeval_0.2.2
#> [53] impute_1.69.0 broom_0.7.11
#> [55] BiocManager_1.30.16 yaml_2.2.1
#> [57] modelr_0.1.8 stevedore_0.9.4
#> [59] crosstalk_1.2.0 backports_1.4.1
#> [61] MassSpecWavelet_1.61.0 usethis_2.1.5
#> [63] tools_4.2.0 ggplotify_0.1.0
#> [65] affyio_1.65.0 ellipsis_0.3.2
#> [67] jquerylib_0.1.4 RColorBrewer_1.1-2
#> [69] proxy_0.4-26 sessioninfo_1.2.2
#> [71] plyr_1.8.6 zlibbioc_1.41.0
#> [73] purrr_0.3.4 RCurl_1.98-1.5
#> [75] prettyunits_1.1.1 ps_1.6.0
#> [77] viridis_0.6.2 pbapply_1.5-0
#> [79] GetoptLong_1.0.5 SummarizedExperiment_1.25.3
#> [81] massconverter_0.99.1 haven_2.4.3
#> [83] ggrepel_0.9.1 cluster_2.1.2
#> [85] fs_1.5.2 furrr_0.2.3
#> [87] data.table_1.14.2 openxlsx_4.2.5
#> [89] circlize_0.4.14 reprex_2.0.1
#> [91] RANN_2.6.1 pcaMethods_1.87.0
#> [93] mvtnorm_1.1-2 matrixStats_0.61.0
#> [95] pkgload_1.2.4 hms_1.1.1
#> [97] patchwork_1.1.1 evaluate_0.14
#> [99] XML_3.99-0.8 leaflet_2.0.4.1
#> [101] readxl_1.3.1 IRanges_2.29.1
#> [103] gridExtra_2.3 shape_1.4.6
#> [105] testthat_3.1.1 compiler_4.2.0
#> [107] tibble_3.1.6 ncdf4_1.17
#> [109] crayon_1.4.2 htmltools_0.5.2
#> [111] pcaPP_1.9-74 tzdb_0.2.0
#> [113] tidyr_1.1.4 rrcov_1.6-0
#> [115] lubridate_1.8.0 DBI_1.1.2
#> [117] tweenr_1.0.2 dbplyr_2.1.1
#> [119] ComplexHeatmap_2.11.0 MASS_7.3-55
#> [121] MsFeatures_1.3.0 Matrix_1.4-0
#> [123] readr_2.1.1 cli_3.1.0
#> [125] vsn_3.63.0 igraph_1.2.6
#> [127] parallel_4.2.0 GenomicRanges_1.47.6
#> [129] forcats_0.5.1 pkgconfig_2.0.3
#> [131] fit.models_0.64 pkgdown_2.0.1
#> [133] plotly_4.10.0 MALDIquant_1.21
#> [135] xml2_1.3.3 foreach_1.5.1
#> [137] ggcorrplot_0.1.3 bslib_0.3.1
#> [139] missForest_1.4 XVector_0.35.0
#> [141] rvest_1.0.2 yulab.utils_0.0.4
#> [143] callr_3.7.0 stringr_1.4.0
#> [145] digest_0.6.29 Biostrings_2.63.1
#> [147] rmarkdown_2.11 cellranger_1.1.0
#> [149] curl_4.3.2 rjson_0.2.21
#> [151] lifecycle_1.0.1 jsonlite_1.7.2
#> [153] desc_1.4.0 viridisLite_0.4.0
#> [155] limma_3.51.2 fansi_1.0.0
#> [157] pillar_1.6.4 ggsci_2.9
#> [159] lattice_0.20-45 pkgbuild_1.3.1
#> [161] KEGGREST_1.35.0 fastmap_1.1.0
#> [163] httr_1.4.2 DEoptimR_1.0-10
#> [165] remotes_2.4.2 glue_1.6.0
#> [167] zip_2.2.0 png_0.1-7
#> [169] iterators_1.0.13 ggforce_0.3.3
#> [171] class_7.3-20 stringi_1.7.6
#> [173] sass_0.4.0 textshaping_0.3.6
#> [175] memoise_2.0.1 tidyverse_1.3.1
#> [177] e1071_1.7-9
