Database constructionConstruct in-house or public MS2 spectra database. |
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Construct in-house or public MS2 database for metid. |
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Correct RTs of metabolites in database using internal standard list |
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Get MS2 spectra of peaks from databaseClass object |
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Construct public MS2 database from massbank with msp format. |
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Construct public MS2 database from MoNA with msp format. |
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Filter adducts. |
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Metabolite identificationMetabolite identification based on MS1 and MS2 databases. |
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Get the peak names which have identifications |
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Transform old style identification table to new style |
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Get MS2 match plots from a metIdentifyClass object |
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Identify single peak based on database. |
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Generate the parameter list for identify_metabolites function |
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Identify metabolites based on MS1 or MS/MS database |
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Get parameters from a metIdentifyClass object |
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Get spectra of peaks from metIdentifyClass object |
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Get identification table from a metIdentifyClass object |
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get_identification_table_all |
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Get identification information from a metIdentifyClass object |
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Filter identifications according to m/z error, RT error, MS similarity and total score |
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Identify metabolites based on MS1 or MS/MS database |
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Identify metabolites based on MS1 or MS/MS database for single peak. |
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Get identification table from a mzIdentifyClass object |
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Get MS2 spectra of peaks from databaseClass object |
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Get parameters from a metIdentifyClass object |
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Identify metabolites using multiple databases one time |
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Identify metabolites based on MS/MS database |
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Identify metabolites based on MS1 or MS/MS database |
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Identify metabolites based on MS/MS database. |
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Identify metabolites based on MS/MS database. |
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Identify metabolites based on MS1 or MS/MS database for single peak. |
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Identify peaks based on MS1 database |
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Generate the mzIdentify parameter list |
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Identify peaks based on MS1 database |
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Identify peaks based on MS1 database |
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DataSome data embed in metid |
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HILIC positive mode adduct table |
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HILIC negative mode adduct table |
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Reverse phase positive mode adduct table |
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Reverse phase negative mode adduct table |
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Michael Snyder lab RPLC database 0.0.2 |
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Michael Snyder lab RPLC database 0.0.2 |
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orbitrap_database0.0.3 |
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Michael Snyder lab RPLC database |
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Michael Snyder lab RPLC database |
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Other functionsOther usefull functions in metid |
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readMGF |
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readMSP |
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readMZXML |
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Show the base information of metid pacakge |
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Conflicts between the metid and other packages |
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Show the base information of metid pacakge |
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List all packages in the metid |
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readMSP_MoNA |
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read_mgf_experiment |
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read_mgf_gnps |
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read_mgf_mona |
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read_msp |
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read_msp_database |
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read_msp_gnps |
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read_msp_mona |
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colnames |
Summary the annotation table |
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An S4 class to represent MS1 or MS2 database. |
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An S4 class to represent annotation result. |
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Export metid database to mgf (gnps format) |
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Export metid database to mgf (MassBank format) |
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Export metid database to mgf (mona format) |
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Export metid database to msp (gnps format) |
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Export metid database to msp (MassBank format) |
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Export metid database to msp (mona format) |